I'm only working from memory,but here goes.Drive the front tires on blocks or position the feeder over a ditch.lower the feeder all the way.If the feeder cyls. are not all the way in,unplug the feeder pot at the top lH sideof the feeder.This will allow you to fully lower the feeder.Now shut off the combine,but leave the key on.plug the pot back in and check the voltage on the blue wire of the feeder pot with a digital meter and straight pin at the connector. Voltage should be .6 to .8 volts. Adjust the linkage (usually shorten] to get this reading.I sometimes have to cut the rod and rethread it.Case says to move the pot in the housing,but that is a pain.Now you have to recalibrate the controller.This is done exactly as the ops manual says. this will teach it the new setting.Make sure there is no linkage binding with the feeder up.Now reinstall the grain head and recalibrate,as you mentioned in your post.this should fix the problem. If you have any problems, call 740-852-1129 and ask for Scott.